STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtNMultidrug resistance protein MdtN. (326 aa)    
Predicted Functional Partners:
emrB
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
 
 
 0.984
oprM
Outer membrane protein OprM precursor.
 
 0.965
stp_3
Spectinomycin tetracycline efflux pump.
 
 
 0.882
bepC
Outer membrane efflux protein BepC precursor.
 
 0.842
stp_1
Spectinomycin tetracycline efflux pump.
 
 
 0.841
bepF
Efflux pump periplasmic linker BepF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.833
stp_2
Spectinomycin tetracycline efflux pump.
 
 
 0.801
cyoD
Cytochrome o ubiquinol oxidase protein CyoD.
 
   
 0.762
bepG
Efflux pump membrane transporter BepG.
 
  
 0.755
qacA_2
Antiseptic resistance protein.
 
 
 0.753
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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