STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phhBPutative pterin-4-alpha-carbinolamine dehydratase. (97 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase.
 
 0.985
CUH45078.1
FemAB-related protein, PEP-CTERM system-associated.
  
    0.858
CUH45080.1
Putative endoribonuclease L-PSP.
  
    0.795
hpd
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.709
ugpQ_2
Glycerophosphoryl diester phosphodiesterase.
   
   0.704
hmgA
Homogentisate 1,2-dioxygenase.
 
  
 0.613
CUH43310.1
Fumarylacetoacetase.
 
  
 0.584
mlaA
Putative phospholipid-binding lipoprotein MlaA precursor.
       0.537
mlaC
Putative phospholipid-binding protein MlaC precursor.
       0.536
CUH42811.1
Putative conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
   
    0.510
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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