STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcBExodeoxyribonuclease I. (458 aa)    
Predicted Functional Partners:
ssb
Helix-destabilizing protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.903
recJ
Single-stranded-DNA-specific exonuclease RecJ.
    
 
 0.671
CUH45460.1
Hypothetical protein; Bifunctional DNA primase/polymerase, N-terminal.
  
     0.588
CUH45466.1
Hemin importer ATP-binding subunit.
       0.561
hsdR
Type-1 restriction enzyme R protein.
       0.553
hsdM
Type I restriction enzyme EcoKI M protein.
       0.553
CUH45464.1
Hypothetical protein.
       0.553
hsdS
Type I restriction enzyme EcoKI specificity protein.
       0.553
CUH45467.1
Hypothetical protein.
       0.553
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.530
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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