Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484BY02Integrase catalytic domain-containing protein. (258 aa)    
Predicted Functional Partners:
A0A484C4Q4
Uncharacterized protein.
   
 0.793
A0A484D8V5
Uncharacterized protein.
   
  
 0.737
A0A484C5E1
Helicase C-terminal domain-containing protein.
    
 0.727
A0A484CB36
Helicase ATP-binding domain-containing protein.
    
 0.727
A0A484D5M6
Uncharacterized protein.
   
   0.711
A0A484DEQ3
THUMP domain-containing protein.
      
 0.612
A0A484C9T9
Uncharacterized protein.
    
 0.566
A0A484CIM2
Uncharacterized protein.
 
 
   0.545
A0A484CWW9
Med12 domain-containing protein.
   
 0.513
A0A484C8Y1
DIRP domain-containing protein.
    
 0.503
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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