A0A484BY38 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484BY38

Uncharacterized protein. (411 aa)

Predicted Functional Partners:

A0A484CPK4

0.990

A0A484C4R2

0.985

A0A484DDW2

0.984

A0A484DH14

0.984

A0A484CYX7

0.979

A0A484DKH7

0.971

A0A484CUW5

0.957

A0A484DB60

0.948

A0A484DB84

0.948

A0A484CIE8

0.926

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BY38	A0A484C4R2	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A484BY38	A0A484CIE8	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A484BY38	A0A484CPK4	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A484BY38	A0A484CUW5	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A484BY38	A0A484CYX7	Uncharacterized protein.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	0.979
A0A484BY38	A0A484DB60	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.948
A0A484BY38	A0A484DB84	Uncharacterized protein.	Uncharacterized protein.	0.948
A0A484BY38	A0A484DDW2	Uncharacterized protein.	IPPc domain-containing protein.	0.984
A0A484BY38	A0A484DH14	Uncharacterized protein.	ABC_transp_aux domain-containing protein.	0.984
A0A484BY38	A0A484DKH7	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A484C4R2	A0A484BY38	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A484C4R2	A0A484CIE8	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A484C4R2	A0A484CPK4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A484C4R2	A0A484CUW5	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A484C4R2	A0A484DB60	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.997
A0A484C4R2	A0A484DB84	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A484C4R2	A0A484DH14	Uncharacterized protein.	ABC_transp_aux domain-containing protein.	0.999
A0A484C4R2	A0A484DKH7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A484CIE8	A0A484BY38	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A484CIE8	A0A484C4R2	Uncharacterized protein.	Uncharacterized protein.	0.997