Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484BY55Uncharacterized protein. (374 aa)    
Predicted Functional Partners:
A0A484BXZ1
Uncharacterized protein.
 
     0.920
A0A484CSG6
Ubiquitin-like domain-containing protein.
    
 
 0.841
A0A484CJI4
RING-type domain-containing protein.
    
 
 0.683
A0A484CMZ7
RING-type domain-containing protein.
    
 
 0.683
A0A484CPA3
RING-type domain-containing protein.
    
 
 0.683
A0A484D0H4
VWFA domain-containing protein.
      
 0.672
A0A484D653
EMC1_C domain-containing protein.
      
 0.644
A0A484CR75
Uncharacterized protein.
      
 0.637
A0A484CDT3
HTTM domain-containing protein.
      
 0.631
A0A484DAF7
Acid sphingomyelinase-like phosphodiesterase.
      
 0.630
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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