A0A484BY83 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484BY83

AAA domain-containing protein. (842 aa)

Predicted Functional Partners:

A0A484CTS3

0.867

A0A484CVP2

0.842

A0A484C897

0.717

A0A484CZM9

0.661

A0A484D121

0.661

A0A484DD87

0.641

A0A484CBI1

0.638

A0A484DF65

0.635

A0A484CVU7

0.621

A0A484C256

0.618

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BY83	A0A484C256	AAA domain-containing protein.	Uncharacterized protein.	0.618
A0A484BY83	A0A484C897	AAA domain-containing protein.	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.717
A0A484BY83	A0A484CBI1	AAA domain-containing protein.	Uncharacterized protein.	0.638
A0A484BY83	A0A484CTS3	AAA domain-containing protein.	UBX domain-containing protein.	0.867
A0A484BY83	A0A484CVP2	AAA domain-containing protein.	Thioredoxin domain-containing protein; Belongs to the NDK family.	0.842
A0A484BY83	A0A484CVU7	AAA domain-containing protein.	Uncharacterized protein.	0.621
A0A484BY83	A0A484CZM9	AAA domain-containing protein.	Uncharacterized protein.	0.661
A0A484BY83	A0A484D121	AAA domain-containing protein.	Uncharacterized protein.	0.661
A0A484BY83	A0A484DD87	AAA domain-containing protein.	Uncharacterized protein.	0.641
A0A484BY83	A0A484DF65	AAA domain-containing protein.	Uncharacterized protein.	0.635
A0A484C256	A0A484BY83	Uncharacterized protein.	AAA domain-containing protein.	0.618
A0A484C897	A0A484BY83	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	AAA domain-containing protein.	0.717
A0A484C897	A0A484CVU7	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	Uncharacterized protein.	0.996
A0A484C897	A0A484CZM9	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	Uncharacterized protein.	0.699
A0A484C897	A0A484D121	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	Uncharacterized protein.	0.699
A0A484CBI1	A0A484BY83	Uncharacterized protein.	AAA domain-containing protein.	0.638
A0A484CBI1	A0A484CVP2	Uncharacterized protein.	Thioredoxin domain-containing protein; Belongs to the NDK family.	0.949
A0A484CTS3	A0A484BY83	UBX domain-containing protein.	AAA domain-containing protein.	0.867
A0A484CTS3	A0A484CVU7	UBX domain-containing protein.	Uncharacterized protein.	0.634
A0A484CTS3	A0A484DD87	UBX domain-containing protein.	Uncharacterized protein.	0.999