STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484BYL5FCP1 homology domain-containing protein. (262 aa)    
Predicted Functional Partners:
A0A484CLA2
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.884
A0A484C881
Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
    
 0.835
A0A484CXB2
S1 domain-containing protein.
    
 0.812
A0A484C593
Uncharacterized protein.
    
 0.776
A0A484DJ77
RPOL4c domain-containing protein.
    
 0.768
A0A484DDT2
RNA_pol_L_2 domain-containing protein.
    
 0.756
A0A484CBG6
RPOLD domain-containing protein.
    
 0.746
A0A484D1M3
RPOLD domain-containing protein.
    
 0.746
A0A484CN67
Uncharacterized protein.
   
 0.742
A0A484D0Q1
Uncharacterized protein.
   
 0.740
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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