Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
A0A484BZ71IF rod domain-containing protein; Belongs to the intermediate filament family. (354 aa)    
Predicted Functional Partners:
A0A484CTV8
Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
     
  0.800
A0A484CYZ9
Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
     
  0.800
A0A484CAS0
Uncharacterized protein.
    
 
 0.796
A0A484C161
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.638
A0A484CE79
RBR-type E3 ubiquitin transferase.
    
 
 0.600
A0A484BYU6
Runt-related transcription factor.
    
  0.585
A0A484C3V6
Runt-related transcription factor.
    
  0.585
A0A484C8B3
Runt-related transcription factor.
    
  0.585
A0A484CGU0
BAG domain-containing protein.
    
 
 0.584
A0A484C5N9
Uncharacterized protein.
    
 
 0.571
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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