Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C057Uncharacterized protein. (927 aa)    
Predicted Functional Partners:
A0A484DIY3
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
    
   0.741
A0A484CUC1
C2H2-type domain-containing protein.
    
 
 0.685
A0A484CVP2
Thioredoxin domain-containing protein; Belongs to the NDK family.
    
 0.654
A0A484DAW4
WD_REPEATS_REGION domain-containing protein.
      
 0.653
A0A484CJU0
Uncharacterized protein.
  
  0.619
A0A484C6B1
Uncharacterized protein.
    
  0.561
A0A484C7R8
Uncharacterized protein.
    
  0.561
A0A484C8I2
Uncharacterized protein.
    
  0.561
A0A484CCC1
LisH domain-containing protein.
    
 
 0.557
A0A484CYR8
Uncharacterized protein.
    
  0.547
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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