A0A484C0N6 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C0N6

Uncharacterized protein. (769 aa)

Predicted Functional Partners:

A0A484CTS3

0.996

A0A484C813

0.962

A0A484DKJ5

0.952

A0A484BYE5

0.930

A0A484CEV5

0.922

A0A484DDU8

0.919

A0A484CFI0

0.915

A0A484C2V4

0.910

A0A484CWQ4

0.906

A0A484DBY1

0.905

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BYE5	A0A484C0N6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.930
A0A484BYE5	A0A484C2V4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.948
A0A484BYE5	A0A484C813	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.958
A0A484BYE5	A0A484CEV5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SCP2 domain-containing protein.	0.960
A0A484BYE5	A0A484CFI0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.875
A0A484BYE5	A0A484CWQ4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.435
A0A484BYE5	A0A484DBY1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.881
A0A484BYE5	A0A484DDU8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.995
A0A484BYE5	A0A484DKJ5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.989
A0A484C0N6	A0A484BYE5	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.930
A0A484C0N6	A0A484C2V4	Uncharacterized protein.	Uncharacterized protein.	0.910
A0A484C0N6	A0A484C813	Uncharacterized protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.962
A0A484C0N6	A0A484CEV5	Uncharacterized protein.	SCP2 domain-containing protein.	0.922
A0A484C0N6	A0A484CFI0	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.915
A0A484C0N6	A0A484CTS3	Uncharacterized protein.	UBX domain-containing protein.	0.996
A0A484C0N6	A0A484CWQ4	Uncharacterized protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.906
A0A484C0N6	A0A484DBY1	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A484C0N6	A0A484DDU8	Uncharacterized protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.919
A0A484C0N6	A0A484DKJ5	Uncharacterized protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.952
A0A484C2V4	A0A484BYE5	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.948