Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C140Homeobox domain-containing protein. (418 aa)    
Predicted Functional Partners:
A0A484CQX5
Uncharacterized protein.
     
 0.688
A0A484CQT6
Uncharacterized protein.
    
 
 0.675
A0A484CGT7
Uncharacterized protein.
     
 0.626
A0A484D7P1
CCHC-type domain-containing protein.
      
 0.554
A0A484CD29
HMG box domain-containing protein.
      
 0.548
A0A484CXI9
HMG box domain-containing protein.
      
 0.517
A0A484D208
HMG box domain-containing protein.
      
 0.517
A0A484D8X9
RNAse_Pc domain-containing protein.
  
     0.485
A0A484CKC9
Fork-head domain-containing protein.
  
 
 0.462
A0A484CTR6
Uncharacterized protein.
     
 0.456
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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