A0A484C1F9 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C1F9

Uncharacterized protein. (759 aa)

Predicted Functional Partners:

A0A484CUI2

0.729

A0A484C6Y3

0.714

A0A484DED7

0.714

A0A484DEB5

0.700

A0A484D5M6

0.662

A0A484CEN6

0.641

A0A484CVP2

0.640

A0A484CVU7

0.615

A0A484CGZ7

0.591

A0A484C4S5

0.590

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C1F9	A0A484C4S5	Uncharacterized protein.	BHLH domain-containing protein.	0.590
A0A484C1F9	A0A484C6Y3	Uncharacterized protein.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.714
A0A484C1F9	A0A484CEN6	Uncharacterized protein.	Uncharacterized protein.	0.641
A0A484C1F9	A0A484CGZ7	Uncharacterized protein.	Uncharacterized protein.	0.591
A0A484C1F9	A0A484CUI2	Uncharacterized protein.	Uncharacterized protein.	0.729
A0A484C1F9	A0A484CVP2	Uncharacterized protein.	Thioredoxin domain-containing protein; Belongs to the NDK family.	0.640
A0A484C1F9	A0A484CVU7	Uncharacterized protein.	Uncharacterized protein.	0.615
A0A484C1F9	A0A484D5M6	Uncharacterized protein.	Uncharacterized protein.	0.662
A0A484C1F9	A0A484DEB5	Uncharacterized protein.	Uncharacterized protein.	0.700
A0A484C1F9	A0A484DED7	Uncharacterized protein.	BHLH domain-containing protein.	0.714
A0A484C4S5	A0A484C1F9	BHLH domain-containing protein.	Uncharacterized protein.	0.590
A0A484C4S5	A0A484C6Y3	BHLH domain-containing protein.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.982
A0A484C4S5	A0A484DED7	BHLH domain-containing protein.	BHLH domain-containing protein.	0.842
A0A484C6Y3	A0A484C1F9	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	Uncharacterized protein.	0.714
A0A484C6Y3	A0A484C4S5	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	BHLH domain-containing protein.	0.982
A0A484C6Y3	A0A484DEB5	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	Uncharacterized protein.	0.641
A0A484C6Y3	A0A484DED7	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	BHLH domain-containing protein.	0.857
A0A484CEN6	A0A484C1F9	Uncharacterized protein.	Uncharacterized protein.	0.641
A0A484CEN6	A0A484CVP2	Uncharacterized protein.	Thioredoxin domain-containing protein; Belongs to the NDK family.	0.981
A0A484CEN6	A0A484DEB5	Uncharacterized protein.	Uncharacterized protein.	0.641