STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C1I6MI domain-containing protein. (838 aa)    
Predicted Functional Partners:
A0A484D0D6
RNA helicase.
   
 
 0.992
A0A484CRN9
WD_REPEATS_REGION domain-containing protein.
   
   0.991
A0A484C0C1
Uncharacterized protein.
   
   0.989
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.988
A0A484DJE6
NUC153 domain-containing protein.
   
   0.986
A0A484CEY2
CBF domain-containing protein.
   
   0.985
A0A484DM77
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.984
A0A484DF84
Sas10 domain-containing protein.
   
 
 0.983
A0A484DFH5
WD_REPEATS_REGION domain-containing protein.
   
   0.981
A0A484DM33
Uncharacterized protein.
   
   0.980
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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