STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C207C1q domain-containing protein. (331 aa)    
Predicted Functional Partners:
A0A484C7Q9
Uncharacterized protein.
      
 0.597
A0A484D8Q0
TFIID_20kDa domain-containing protein.
    
 0.541
A0A484C585
EF-hand domain-containing protein.
    
 
 0.451
A0A484C8W0
Uncharacterized protein.
    
 
 0.451
A0A484DGH4
Cytochrome b5 heme-binding domain-containing protein.
    
   0.440
A0A484CNY6
Uncharacterized protein.
    
 0.434
A0A484DCU1
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.426
A0A484CPV6
Uncharacterized protein.
    
  0.408
A0A484DB12
Uncharacterized protein.
    
  0.408
A0A484CTF8
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.403
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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