A0A484C2C4 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C2C4

Helicase C-terminal domain-containing protein. (1583 aa)

Predicted Functional Partners:

A0A484CS47

0.953

A0A484CZY0

0.953

A0A484CM73

0.951

A0A484DFD7

0.951

A0A484C810

0.948

A0A484CZW8

0.946

A0A484C066

0.945

A0A484C340

0.912

A0A484C6I7

0.911

A0A484C7V9

0.895

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C066	A0A484C2C4	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.945
A0A484C066	A0A484C340	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.986
A0A484C066	A0A484C6I7	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A484C066	A0A484C7V9	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.928
A0A484C066	A0A484C810	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A484C066	A0A484CM73	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.973
A0A484C066	A0A484CS47	Uncharacterized protein.	YL1_C domain-containing protein.	0.981
A0A484C066	A0A484CZW8	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.970
A0A484C066	A0A484CZY0	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A484C066	A0A484DFD7	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.985
A0A484C2C4	A0A484C066	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.945
A0A484C2C4	A0A484C340	Helicase C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.912
A0A484C2C4	A0A484C6I7	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.911
A0A484C2C4	A0A484C7V9	Helicase C-terminal domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.895
A0A484C2C4	A0A484C810	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.948
A0A484C2C4	A0A484CM73	Helicase C-terminal domain-containing protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.951
A0A484C2C4	A0A484CS47	Helicase C-terminal domain-containing protein.	YL1_C domain-containing protein.	0.953
A0A484C2C4	A0A484CZW8	Helicase C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.946
A0A484C2C4	A0A484CZY0	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.953
A0A484C2C4	A0A484DFD7	Helicase C-terminal domain-containing protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.951