A0A484C2U6 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C2U6

Uncharacterized protein. (2754 aa)

Predicted Functional Partners:

A0A484CCM0

0.988

A0A484CFS7

0.987

A0A484DKM0

0.987

A0A484CYR8

0.985

A0A484DEB5

0.984

A0A484CB00

0.977

A0A484DA27

0.974

A0A484CHV1

0.947

A0A484CPU3

0.947

A0A484DMQ8

0.936

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C2U6	A0A484CB00	Uncharacterized protein.	IRF tryptophan pentad repeat domain-containing protein.	0.977
A0A484C2U6	A0A484CCM0	Uncharacterized protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.988
A0A484C2U6	A0A484CFS7	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A484C2U6	A0A484CHV1	Uncharacterized protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.947
A0A484C2U6	A0A484CPU3	Uncharacterized protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.947
A0A484C2U6	A0A484CYR8	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A484C2U6	A0A484DA27	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A484C2U6	A0A484DEB5	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A484C2U6	A0A484DKM0	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A484C2U6	A0A484DMQ8	Uncharacterized protein.	BZIP domain-containing protein.	0.936
A0A484CB00	A0A484C2U6	IRF tryptophan pentad repeat domain-containing protein.	Uncharacterized protein.	0.977
A0A484CB00	A0A484CCM0	IRF tryptophan pentad repeat domain-containing protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.437
A0A484CB00	A0A484CFS7	IRF tryptophan pentad repeat domain-containing protein.	Uncharacterized protein.	0.984
A0A484CB00	A0A484CHV1	IRF tryptophan pentad repeat domain-containing protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.563
A0A484CB00	A0A484CPU3	IRF tryptophan pentad repeat domain-containing protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.521
A0A484CB00	A0A484DA27	IRF tryptophan pentad repeat domain-containing protein.	Uncharacterized protein.	0.813
A0A484CB00	A0A484DKM0	IRF tryptophan pentad repeat domain-containing protein.	Uncharacterized protein.	0.984
A0A484CCM0	A0A484C2U6	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	Uncharacterized protein.	0.988
A0A484CCM0	A0A484CB00	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	IRF tryptophan pentad repeat domain-containing protein.	0.437
A0A484CCM0	A0A484CFS7	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	Uncharacterized protein.	0.990