STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C362Uncharacterized protein. (1004 aa)    
Predicted Functional Partners:
A0A484C4G0
Uncharacterized protein.
   
 0.999
A0A484C0X4
Uncharacterized protein.
    
 0.874
A0A484CRG9
Uncharacterized protein.
    
 0.874
A0A484CD12
Uncharacterized protein.
    
 
 0.833
A0A484CA50
Aa_trans domain-containing protein.
   
    0.822
A0A484DBQ8
WD_REPEATS_REGION domain-containing protein.
   
 
 0.818
A0A484DEE6
Uncharacterized protein.
   
 
 0.818
A0A484DQ62
WD_REPEATS_REGION domain-containing protein.
   
 
 0.818
A0A484CU27
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
   
 
 0.794
A0A484CQW9
MSP domain-containing protein.
    
 
 0.775
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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