Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A484C394RRM domain-containing protein. (202 aa)    
Predicted Functional Partners:
A0A484C458
Uncharacterized protein.
    
 
 0.689
A0A484CF91
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
   
 0.685
A0A484CQF3
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
   
 0.685
A0A484DM68
RRM domain-containing protein.
   
 0.685
A0A484CDX6
Uncharacterized protein.
    
 
 0.673
A0A484D0Q5
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.669
A0A484CWL4
MIF4G domain-containing protein.
    
 0.668
A0A484D800
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
 0.665
A0A484D094
Uncharacterized protein.
   
 
 0.658
A0A484DAZ5
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
   
 0.653
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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