STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C3F7Uncharacterized protein. (2076 aa)    
Predicted Functional Partners:
A0A484DHQ5
Uncharacterized protein.
   
  
0.868
A0A484CVG9
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
  
 0.809
A0A484D4U2
E2_bind domain-containing protein.
     
 0.658
A0A484DGJ8
E2_bind domain-containing protein.
     
 0.658
A0A484D1R8
Ubiquitin-like domain-containing protein.
    
  0.626
A0A484D661
UBR-type domain-containing protein.
   
  
 0.615
A0A484CGF5
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
 0.610
A0A484CUS3
USP domain-containing protein; Belongs to the peptidase C19 family.
   
   0.547
A0A484C6N4
ThiF domain-containing protein.
     
 0.545
A0A484DGE7
Uncharacterized protein.
     
 0.545
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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