STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C3R2Uncharacterized protein. (945 aa)    
Predicted Functional Partners:
A0A484D723
Uncharacterized protein.
    
 
 0.930
A0A484C5K9
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.901
A0A484CT09
COMM domain-containing protein.
    
 
 0.890
A0A484CYZ0
COMM domain-containing protein.
    
 
 0.872
A0A484CWC2
KOG2701 domain-containing protein.
    
 
 0.867
A0A484D2L6
COMM domain-containing protein.
    
 
 0.856
A0A484CMW5
Uncharacterized protein.
   
 
 0.780
A0A484CGI1
UDENN domain-containing protein.
    
 
 0.755
A0A484DEG3
COMM domain-containing protein.
    
 
 0.730
A0A484C450
COMM domain-containing protein.
    
 
 0.654
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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