A0A484C3U1 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C3U1

VWFA domain-containing protein. (1028 aa)

Predicted Functional Partners:

A0A484CG16

0.859

A0A484CGB6

0.859

A0A484DKI8

0.859

A0A484CPV1

0.845

A0A484CPE5

0.814

A0A484CNS1

0.813

A0A484CXE0

0.813

A0A484DAV3

0.813

A0A484C1J9

0.807

A0A484CQ58

0.807

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C1J9	A0A484C3U1	SH3 domain-containing protein.	VWFA domain-containing protein.	0.807
A0A484C1J9	A0A484CG16	SH3 domain-containing protein.	Uncharacterized protein.	0.801
A0A484C1J9	A0A484CGB6	SH3 domain-containing protein.	Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.	0.867
A0A484C1J9	A0A484CNS1	SH3 domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the SKP1 family.	0.832
A0A484C1J9	A0A484CPE5	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.813
A0A484C1J9	A0A484CPV1	SH3 domain-containing protein.	SH3 domain-containing protein.	0.435
A0A484C1J9	A0A484CXE0	SH3 domain-containing protein.	Serine/threonine-protein phosphatase.	0.832
A0A484C1J9	A0A484DAV3	SH3 domain-containing protein.	Serine/threonine-protein phosphatase.	0.832
A0A484C1J9	A0A484DKI8	SH3 domain-containing protein.	Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.	0.867
A0A484C3U1	A0A484C1J9	VWFA domain-containing protein.	SH3 domain-containing protein.	0.807
A0A484C3U1	A0A484CG16	VWFA domain-containing protein.	Uncharacterized protein.	0.859
A0A484C3U1	A0A484CGB6	VWFA domain-containing protein.	Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.	0.859
A0A484C3U1	A0A484CNS1	VWFA domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the SKP1 family.	0.813
A0A484C3U1	A0A484CPE5	VWFA domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.814
A0A484C3U1	A0A484CPV1	VWFA domain-containing protein.	SH3 domain-containing protein.	0.845
A0A484C3U1	A0A484CQ58	VWFA domain-containing protein.	SH3 domain-containing protein.	0.807
A0A484C3U1	A0A484CXE0	VWFA domain-containing protein.	Serine/threonine-protein phosphatase.	0.813
A0A484C3U1	A0A484DAV3	VWFA domain-containing protein.	Serine/threonine-protein phosphatase.	0.813
A0A484C3U1	A0A484DKI8	VWFA domain-containing protein.	Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.	0.859
A0A484CG16	A0A484C1J9	Uncharacterized protein.	SH3 domain-containing protein.	0.801