A0A484C3W2 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C3W2

Nrf1_DNA-bind domain-containing protein. (505 aa)

Predicted Functional Partners:

A0A484CDG4

0.944

A0A484CB56

0.892

A0A484DKS2

0.891

A0A484CXI0

0.876

A0A484CWJ4

0.832

A0A484C399

0.669

A0A484CCI0

0.609

A0A484CVA5

0.609

A0A484CL60

0.599

A0A484CC43

0.576

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C399	A0A484C3W2	Uncharacterized protein.	Nrf1_DNA-bind domain-containing protein.	0.669
A0A484C399	A0A484CB56	Uncharacterized protein.	RRM domain-containing protein.	0.668
A0A484C399	A0A484CC43	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.660
A0A484C399	A0A484CCI0	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.410
A0A484C399	A0A484CDG4	Uncharacterized protein.	RRM domain-containing protein.	0.921
A0A484C399	A0A484CVA5	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.410
A0A484C399	A0A484CXI0	Uncharacterized protein.	Uncharacterized protein.	0.509
A0A484C399	A0A484DKS2	Uncharacterized protein.	RRM domain-containing protein.	0.668
A0A484C3W2	A0A484C399	Nrf1_DNA-bind domain-containing protein.	Uncharacterized protein.	0.669
A0A484C3W2	A0A484CB56	Nrf1_DNA-bind domain-containing protein.	RRM domain-containing protein.	0.892
A0A484C3W2	A0A484CC43	Nrf1_DNA-bind domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.576
A0A484C3W2	A0A484CCI0	Nrf1_DNA-bind domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.609
A0A484C3W2	A0A484CDG4	Nrf1_DNA-bind domain-containing protein.	RRM domain-containing protein.	0.944
A0A484C3W2	A0A484CL60	Nrf1_DNA-bind domain-containing protein.	BZIP domain-containing protein.	0.599
A0A484C3W2	A0A484CVA5	Nrf1_DNA-bind domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.609
A0A484C3W2	A0A484CWJ4	Nrf1_DNA-bind domain-containing protein.	Uncharacterized protein.	0.832
A0A484C3W2	A0A484CXI0	Nrf1_DNA-bind domain-containing protein.	Uncharacterized protein.	0.876
A0A484C3W2	A0A484DKS2	Nrf1_DNA-bind domain-containing protein.	RRM domain-containing protein.	0.891
A0A484CB56	A0A484C399	RRM domain-containing protein.	Uncharacterized protein.	0.668
A0A484CB56	A0A484C3W2	RRM domain-containing protein.	Nrf1_DNA-bind domain-containing protein.	0.892