A0A484C4F2 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C4F2

Uncharacterized protein. (1251 aa)

Predicted Functional Partners:

A0A484C8X6

0.972

A0A484BY20

0.960

A0A484C9U5

0.923

A0A484DFH1

0.836

A0A484DPS0

0.836

A0A484CSL7

0.769

A0A484D0Q2

0.747

A0A484DC57

0.673

A0A484CYW4

0.656

A0A484DJN2

0.654

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BY20	A0A484C4F2	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A484BY20	A0A484C8X6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.999
A0A484BY20	A0A484C9U5	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.999
A0A484BY20	A0A484DFH1	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.999
A0A484BY20	A0A484DPS0	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.978
A0A484C4F2	A0A484BY20	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A484C4F2	A0A484C8X6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.972
A0A484C4F2	A0A484C9U5	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.923
A0A484C4F2	A0A484CSL7	Uncharacterized protein.	Uncharacterized protein.	0.769
A0A484C4F2	A0A484CYW4	Uncharacterized protein.	Uncharacterized protein.	0.656
A0A484C4F2	A0A484D0Q2	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A484C4F2	A0A484DC57	Uncharacterized protein.	Uncharacterized protein.	0.673
A0A484C4F2	A0A484DFH1	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.836
A0A484C4F2	A0A484DJN2	Uncharacterized protein.	Uncharacterized protein.	0.654
A0A484C4F2	A0A484DPS0	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.836
A0A484C8X6	A0A484BY20	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Uncharacterized protein.	0.999
A0A484C8X6	A0A484C4F2	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Uncharacterized protein.	0.972
A0A484C8X6	A0A484C9U5	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Pep3_Vps18 domain-containing protein.	0.999
A0A484C8X6	A0A484DFH1	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.999
A0A484C8X6	A0A484DPS0	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.960