A0A484C550 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C550

Rab-GAP TBC domain-containing protein. (571 aa)

Predicted Functional Partners:

A0A484C918

0.909

A0A484CDQ4

0.826

A0A484DEF7

0.822

A0A484DHL0

0.808

A0A484CCD0

0.807

A0A484D8F7

0.807

A0A484CR62

0.780

A0A484DQT3

0.772

A0A484CSS7

0.764

A0A484CTV0

0.760

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C550	A0A484C918	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.909
A0A484C550	A0A484CCD0	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.807
A0A484C550	A0A484CDQ4	Rab-GAP TBC domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.826
A0A484C550	A0A484CR62	Rab-GAP TBC domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.780
A0A484C550	A0A484CSS7	Rab-GAP TBC domain-containing protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.764
A0A484C550	A0A484CTV0	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.760
A0A484C550	A0A484D8F7	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.807
A0A484C550	A0A484DEF7	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.822
A0A484C550	A0A484DHL0	Rab-GAP TBC domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.808
A0A484C550	A0A484DQT3	Rab-GAP TBC domain-containing protein.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.772
A0A484C918	A0A484C550	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.909
A0A484CCD0	A0A484C550	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.807
A0A484CCD0	A0A484CDQ4	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A484CCD0	A0A484CR62	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.992
A0A484CCD0	A0A484CTV0	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A484CCD0	A0A484D8F7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A484CCD0	A0A484DEF7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A484CDQ4	A0A484C550	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Rab-GAP TBC domain-containing protein.	0.826
A0A484CDQ4	A0A484CCD0	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
A0A484CDQ4	A0A484CR62	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.992