A0A484C590 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C590

Fork-head domain-containing protein. (774 aa)

Predicted Functional Partners:

A0A484BYU6

0.686

A0A484C3V6

0.686

A0A484C8B3

0.686

A0A484C0G2

0.685

A0A484C0U6

0.637

A0A484D4F1

0.633

A0A484DBW0

0.619

A0A484DPU6

0.592

MED8

0.587

A0A484CM24

0.577

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484BYU6	A0A484C590	A0A484BYU6	A0A484C590	Runt-related transcription factor.	Fork-head domain-containing protein.	0.686
A0A484C0G2	A0A484C0U6	A0A484C0G2	A0A484C0U6	HMG box domain-containing protein.	Uncharacterized protein.	0.667
A0A484C0G2	A0A484C590	A0A484C0G2	A0A484C590	HMG box domain-containing protein.	Fork-head domain-containing protein.	0.685
A0A484C0U6	A0A484C0G2	A0A484C0U6	A0A484C0G2	Uncharacterized protein.	HMG box domain-containing protein.	0.667
A0A484C0U6	A0A484C590	A0A484C0U6	A0A484C590	Uncharacterized protein.	Fork-head domain-containing protein.	0.637
A0A484C3V6	A0A484C590	A0A484C3V6	A0A484C590	Runt-related transcription factor.	Fork-head domain-containing protein.	0.686
A0A484C590	A0A484BYU6	A0A484C590	A0A484BYU6	Fork-head domain-containing protein.	Runt-related transcription factor.	0.686
A0A484C590	A0A484C0G2	A0A484C590	A0A484C0G2	Fork-head domain-containing protein.	HMG box domain-containing protein.	0.685
A0A484C590	A0A484C0U6	A0A484C590	A0A484C0U6	Fork-head domain-containing protein.	Uncharacterized protein.	0.637
A0A484C590	A0A484C3V6	A0A484C590	A0A484C3V6	Fork-head domain-containing protein.	Runt-related transcription factor.	0.686
A0A484C590	A0A484C8B3	A0A484C590	A0A484C8B3	Fork-head domain-containing protein.	Runt-related transcription factor.	0.686
A0A484C590	A0A484CM24	A0A484C590	A0A484CM24	Fork-head domain-containing protein.	Transcription initiation factor TFIID subunit.	0.577
A0A484C590	A0A484D4F1	A0A484C590	A0A484D4F1	Fork-head domain-containing protein.	RHD domain-containing protein.	0.633
A0A484C590	A0A484DBW0	A0A484C590	A0A484DBW0	Fork-head domain-containing protein.	Uncharacterized protein.	0.619
A0A484C590	A0A484DPU6	A0A484C590	A0A484DPU6	Fork-head domain-containing protein.	Uncharacterized protein.	0.592
A0A484C590	MED8	A0A484C590	A0A484CZ70	Fork-head domain-containing protein.	Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.587
A0A484C8B3	A0A484C590	A0A484C8B3	A0A484C590	Runt-related transcription factor.	Fork-head domain-containing protein.	0.686
A0A484CM24	A0A484C590	A0A484CM24	A0A484C590	Transcription initiation factor TFIID subunit.	Fork-head domain-containing protein.	0.577
A0A484CM24	MED8	A0A484CM24	A0A484CZ70	Transcription initiation factor TFIID subunit.	Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.714
A0A484D4F1	A0A484C590	A0A484D4F1	A0A484C590	RHD domain-containing protein.	Fork-head domain-containing protein.	0.633