A0A484C5M2 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C5M2

Uncharacterized protein. (1020 aa)

Predicted Functional Partners:

A0A484CIZ3

0.717

A0A484CUI2

0.711

A0A484CCF6

0.636

A0A484DFR7

0.636

A0A484DN01

0.636

A0A484D3P6

0.628

A0A484DEM6

0.628

A0A484DFV9

0.628

A0A484CTR3

0.626

A0A484C5C4

0.624

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C5C4	A0A484C5M2	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.624
A0A484C5C4	A0A484CTR3	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Ncstrn_small domain-containing protein.	0.989
A0A484C5C4	A0A484D3P6	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.421
A0A484C5C4	A0A484DEM6	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.421
A0A484C5C4	A0A484DFV9	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.421
A0A484C5M2	A0A484C5C4	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.624
A0A484C5M2	A0A484CCF6	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A484C5M2	A0A484CIZ3	Uncharacterized protein.	ARID domain-containing protein.	0.717
A0A484C5M2	A0A484CTR3	Uncharacterized protein.	Ncstrn_small domain-containing protein.	0.626
A0A484C5M2	A0A484CUI2	Uncharacterized protein.	Uncharacterized protein.	0.711
A0A484C5M2	A0A484D3P6	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A484C5M2	A0A484DEM6	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A484C5M2	A0A484DFR7	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A484C5M2	A0A484DFV9	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A484C5M2	A0A484DN01	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A484CCF6	A0A484C5M2	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A484CCF6	A0A484DFR7	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A484CIZ3	A0A484C5M2	ARID domain-containing protein.	Uncharacterized protein.	0.717
A0A484CTR3	A0A484C5C4	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.989
A0A484CTR3	A0A484C5M2	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.626