A0A484C630 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C630

Uncharacterized protein. (368 aa)

Predicted Functional Partners:

A0A484C9F6

0.968

A0A484C589

0.967

RTCB

0.966

A0A484CSA5

0.953

A0A484C4E3

0.876

A0A484DCH2

0.771

A0A484C3T6

0.754

A0A484CVU3

0.750

A0A484C5E5

0.720

A0A484CSG5

0.720

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484C3T6	A0A484C589	A0A484C3T6	A0A484C589	Archease domain-containing protein.	Uncharacterized protein.	0.676
A0A484C3T6	A0A484C630	A0A484C3T6	A0A484C630	Archease domain-containing protein.	Uncharacterized protein.	0.754
A0A484C3T6	A0A484C9F6	A0A484C3T6	A0A484C9F6	Archease domain-containing protein.	Uncharacterized protein.	0.800
A0A484C3T6	A0A484CSA5	A0A484C3T6	A0A484CSA5	Archease domain-containing protein.	Uncharacterized protein.	0.642
A0A484C3T6	RTCB	A0A484C3T6	A0A484BZS4	Archease domain-containing protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.976
A0A484C4E3	A0A484C630	A0A484C4E3	A0A484C630	Uncharacterized protein.	Uncharacterized protein.	0.876
A0A484C4E3	A0A484DCH2	A0A484C4E3	A0A484DCH2	Uncharacterized protein.	Uncharacterized protein.	0.751
A0A484C589	A0A484C3T6	A0A484C589	A0A484C3T6	Uncharacterized protein.	Archease domain-containing protein.	0.676
A0A484C589	A0A484C630	A0A484C589	A0A484C630	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A484C589	A0A484C9F6	A0A484C589	A0A484C9F6	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A484C589	A0A484CSA5	A0A484C589	A0A484CSA5	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A484C589	RTCB	A0A484C589	A0A484BZS4	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.974
A0A484C5E5	A0A484C630	A0A484C5E5	A0A484C630	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A484C5E5	A0A484C9F6	A0A484C5E5	A0A484C9F6	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A484C5E5	A0A484CSG5	A0A484C5E5	A0A484CSG5	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A484C5E5	A0A484CVU3	A0A484C5E5	A0A484CVU3	Uncharacterized protein.	Uncharacterized protein.	0.814
A0A484C630	A0A484C3T6	A0A484C630	A0A484C3T6	Uncharacterized protein.	Archease domain-containing protein.	0.754
A0A484C630	A0A484C4E3	A0A484C630	A0A484C4E3	Uncharacterized protein.	Uncharacterized protein.	0.876
A0A484C630	A0A484C589	A0A484C630	A0A484C589	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A484C630	A0A484C5E5	A0A484C630	A0A484C5E5	Uncharacterized protein.	Uncharacterized protein.	0.720