A0A484C654 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C654

Uncharacterized protein. (249 aa)

Predicted Functional Partners:

A0A484CM33

0.705

FEN1

0.691

A0A484DD89

0.589

A0A484CGU9

0.578

A0A484DBD4

0.578

A0A484DBI2

0.578

A0A484CAJ6

0.565

A0A484CQ25

0.565

A0A484C2I8

0.552

A0A484CKP5

0.500

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484C2I8	A0A484C654	A0A484C2I8	A0A484C654	SF4 helicase domain-containing protein.	Uncharacterized protein.	0.552
A0A484C2I8	A0A484DD89	A0A484C2I8	A0A484DD89	SF4 helicase domain-containing protein.	Uncharacterized protein.	0.880
A0A484C2I8	FEN1	A0A484C2I8	A0A484C673	SF4 helicase domain-containing protein.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.510
A0A484C654	A0A484C2I8	A0A484C654	A0A484C2I8	Uncharacterized protein.	SF4 helicase domain-containing protein.	0.552
A0A484C654	A0A484CAJ6	A0A484C654	A0A484CAJ6	Uncharacterized protein.	PUM-HD domain-containing protein.	0.565
A0A484C654	A0A484CGU9	A0A484C654	A0A484CGU9	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A484C654	A0A484CKP5	A0A484C654	A0A484CKP5	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.500
A0A484C654	A0A484CM33	A0A484C654	A0A484CM33	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A484C654	A0A484CQ25	A0A484C654	A0A484CQ25	Uncharacterized protein.	PUM-HD domain-containing protein.	0.565
A0A484C654	A0A484DBD4	A0A484C654	A0A484DBD4	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.578
A0A484C654	A0A484DBI2	A0A484C654	A0A484DBI2	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.578
A0A484C654	A0A484DD89	A0A484C654	A0A484DD89	Uncharacterized protein.	Uncharacterized protein.	0.589
A0A484C654	FEN1	A0A484C654	A0A484C673	Uncharacterized protein.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.691
A0A484CAJ6	A0A484C654	A0A484CAJ6	A0A484C654	PUM-HD domain-containing protein.	Uncharacterized protein.	0.565
A0A484CAJ6	A0A484CM33	A0A484CAJ6	A0A484CM33	PUM-HD domain-containing protein.	Uncharacterized protein.	0.439
A0A484CGU9	A0A484C654	A0A484CGU9	A0A484C654	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A484CKP5	A0A484C654	A0A484CKP5	A0A484C654	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Uncharacterized protein.	0.500
A0A484CM33	A0A484C654	A0A484CM33	A0A484C654	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A484CM33	A0A484CAJ6	A0A484CM33	A0A484CAJ6	Uncharacterized protein.	PUM-HD domain-containing protein.	0.439
A0A484CM33	A0A484CQ25	A0A484CM33	A0A484CQ25	Uncharacterized protein.	PUM-HD domain-containing protein.	0.439