Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C668BTB domain-containing protein. (398 aa)    
Predicted Functional Partners:
A0A484C947
Uncharacterized protein.
 
      0.900
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
      
 0.631
A0A484C769
UDENN domain-containing protein.
      
 0.629
A0A484DG31
Uncharacterized protein.
      
 0.628
A0A484CZB1
Uncharacterized protein.
      
 0.619
A0A484CTS3
UBX domain-containing protein.
    
  0.599
A0A484C470
TPR_REGION domain-containing protein.
    
 0.592
A0A484CWM5
Uncharacterized protein.
    
 0.544
A0A484CQ84
Proteasome subunit alpha type.
    
 0.543
A0A484D744
PHTB1_C domain-containing protein.
    
 0.530
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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