A0A484C702 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C702

Uncharacterized protein. (1604 aa)

Predicted Functional Partners:

A0A484DP26

0.967

A0A484C472

0.951

A0A484CHL1

0.885

A0A484CYL5

0.885

A0A484DK32

0.885

A0A484CJH0

0.874

A0A484CZP6

0.874

A0A484DPZ0

0.874

A0A484CZ45

0.856

A0A484D489

0.851

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C472	A0A484C702	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	Uncharacterized protein.	0.951
A0A484C472	A0A484CJH0	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	Uncharacterized protein.	0.867
A0A484C472	A0A484CYL5	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	HECT domain-containing protein.	0.901
A0A484C472	A0A484CZP6	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	Uncharacterized protein.	0.867
A0A484C472	A0A484DP26	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	Protein kinase domain-containing protein.	0.822
A0A484C472	A0A484DPZ0	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	Uncharacterized protein.	0.867
A0A484C702	A0A484C472	Uncharacterized protein.	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	0.951
A0A484C702	A0A484CHL1	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A484C702	A0A484CJH0	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A484C702	A0A484CYL5	Uncharacterized protein.	HECT domain-containing protein.	0.885
A0A484C702	A0A484CZ45	Uncharacterized protein.	Uncharacterized protein.	0.856
A0A484C702	A0A484CZP6	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A484C702	A0A484D489	Uncharacterized protein.	CEP209_CC5 domain-containing protein.	0.851
A0A484C702	A0A484DK32	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A484C702	A0A484DP26	Uncharacterized protein.	Protein kinase domain-containing protein.	0.967
A0A484C702	A0A484DPZ0	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A484CHL1	A0A484C702	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A484CHL1	A0A484CJH0	Uncharacterized protein.	Uncharacterized protein.	0.492
A0A484CHL1	A0A484CZP6	Uncharacterized protein.	Uncharacterized protein.	0.492
A0A484CHL1	A0A484D489	Uncharacterized protein.	CEP209_CC5 domain-containing protein.	0.981