A0A484C795 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C795

Uncharacterized protein. (1924 aa)

Predicted Functional Partners:

A0A484DP69

0.583

CTU2

0.542

A0A484C4L0

0.530

A0A484DPS1

0.530

A0A484CU27

0.528

A0A484C9M3

0.522

A0A484BYK2

0.515

A0A484C4Z5

0.515

A0A484CAF6

0.515

A0A484CFG5

0.515

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484BYK2	A0A484C795	A0A484BYK2	A0A484C795	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A484BYK2	A0A484CU27	A0A484BYK2	A0A484CU27	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.665
A0A484C4L0	A0A484C795	A0A484C4L0	A0A484C795	Uncharacterized protein.	Uncharacterized protein.	0.530
A0A484C4L0	A0A484CU27	A0A484C4L0	A0A484CU27	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.461
A0A484C4L0	A0A484DP69	A0A484C4L0	A0A484DP69	Uncharacterized protein.	UDENN domain-containing protein.	0.651
A0A484C4Z5	A0A484C795	A0A484C4Z5	A0A484C795	CABIT domain-containing protein.	Uncharacterized protein.	0.515
A0A484C4Z5	A0A484CU27	A0A484C4Z5	A0A484CU27	CABIT domain-containing protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.651
A0A484C795	A0A484BYK2	A0A484C795	A0A484BYK2	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A484C795	A0A484C4L0	A0A484C795	A0A484C4L0	Uncharacterized protein.	Uncharacterized protein.	0.530
A0A484C795	A0A484C4Z5	A0A484C795	A0A484C4Z5	Uncharacterized protein.	CABIT domain-containing protein.	0.515
A0A484C795	A0A484C9M3	A0A484C795	A0A484C9M3	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A484C795	A0A484CAF6	A0A484C795	A0A484CAF6	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A484C795	A0A484CFG5	A0A484C795	A0A484CFG5	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A484C795	A0A484CU27	A0A484C795	A0A484CU27	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.528
A0A484C795	A0A484DP69	A0A484C795	A0A484DP69	Uncharacterized protein.	UDENN domain-containing protein.	0.583
A0A484C795	A0A484DPS1	A0A484C795	A0A484DPS1	Uncharacterized protein.	Uncharacterized protein.	0.530
A0A484C795	CTU2	A0A484C795	A0A484CBE5	Uncharacterized protein.	Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with CTU1/ATPBD3 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	0.542
A0A484C9M3	A0A484C795	A0A484C9M3	A0A484C795	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A484C9M3	A0A484CU27	A0A484C9M3	A0A484CU27	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.665
A0A484CAF6	A0A484C795	A0A484CAF6	A0A484C795	Uncharacterized protein.	Uncharacterized protein.	0.515