A0A484C887 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C887

Uncharacterized protein; Belongs to the DEAD box helicase family. (672 aa)

Predicted Functional Partners:

PES1

0.918

A0A484D272

0.857

WDR12

0.844

A0A484BY27

0.819

A0A484D7W3

0.816

A0A484CJK9

0.815

A0A484DFF3

0.812

A0A484DGH0

0.812

A0A484CRL9

0.805

A0A484DN65

0.794

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484BY27	A0A484C887	A0A484BY27	A0A484C887	Nop domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.819
A0A484BY27	A0A484CJK9	A0A484BY27	A0A484CJK9	Nop domain-containing protein.	Uncharacterized protein.	0.989
A0A484BY27	A0A484CRL9	A0A484BY27	A0A484CRL9	Nop domain-containing protein.	Uncharacterized protein.	0.669
A0A484BY27	A0A484D272	A0A484BY27	A0A484D272	Nop domain-containing protein.	Uncharacterized protein.	0.986
A0A484BY27	A0A484DFF3	A0A484BY27	A0A484DFF3	Nop domain-containing protein.	CP-type G domain-containing protein.	0.928
A0A484BY27	A0A484DGH0	A0A484BY27	A0A484DGH0	Nop domain-containing protein.	CP-type G domain-containing protein.	0.920
A0A484BY27	A0A484DN65	A0A484BY27	A0A484DN65	Nop domain-containing protein.	Uncharacterized protein.	0.998
A0A484BY27	PES1	A0A484BY27	A0A484DBL2	Nop domain-containing protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.977
A0A484BY27	WDR12	A0A484BY27	A0A484BY35	Nop domain-containing protein.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.979
A0A484C887	A0A484BY27	A0A484C887	A0A484BY27	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nop domain-containing protein.	0.819
A0A484C887	A0A484CJK9	A0A484C887	A0A484CJK9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.815
A0A484C887	A0A484CRL9	A0A484C887	A0A484CRL9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.805
A0A484C887	A0A484D272	A0A484C887	A0A484D272	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.857
A0A484C887	A0A484D7W3	A0A484C887	A0A484D7W3	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.816
A0A484C887	A0A484DFF3	A0A484C887	A0A484DFF3	Uncharacterized protein; Belongs to the DEAD box helicase family.	CP-type G domain-containing protein.	0.812
A0A484C887	A0A484DGH0	A0A484C887	A0A484DGH0	Uncharacterized protein; Belongs to the DEAD box helicase family.	CP-type G domain-containing protein.	0.812
A0A484C887	A0A484DN65	A0A484C887	A0A484DN65	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.794
A0A484C887	PES1	A0A484C887	A0A484DBL2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.918
A0A484C887	WDR12	A0A484C887	A0A484BY35	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.844
A0A484CJK9	A0A484BY27	A0A484CJK9	A0A484BY27	Uncharacterized protein.	Nop domain-containing protein.	0.989