A0A484C889 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C889

Uncharacterized protein. (292 aa)

Predicted Functional Partners:

A0A484CLG6

0.950

A0A484CG55

0.946

A0A484D1S3

0.946

A0A484DCM4

0.946

A0A484D0H5

0.936

A0A484DHP8

0.891

A0A484C6A2

0.890

A0A484C296

0.873

A0A484CHL8

0.873

A0A484CQ53

0.871

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C296	A0A484C6A2	Ubiquitin-like domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.989
A0A484C296	A0A484C889	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.873
A0A484C296	A0A484CG55	Ubiquitin-like domain-containing protein.	Tyrosine-protein kinase.	0.478
A0A484C296	A0A484CHL8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.844
A0A484C296	A0A484CLG6	Ubiquitin-like domain-containing protein.	Tyrosine-protein kinase.	0.478
A0A484C296	A0A484D1S3	Ubiquitin-like domain-containing protein.	Tyrosine-protein kinase.	0.478
A0A484C296	A0A484DCM4	Ubiquitin-like domain-containing protein.	Tyrosine-protein kinase.	0.478
A0A484C296	A0A484DHP8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.932
A0A484C6A2	A0A484C296	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Ubiquitin-like domain-containing protein.	0.989
A0A484C6A2	A0A484C889	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.890
A0A484C6A2	A0A484CG55	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Tyrosine-protein kinase.	0.508
A0A484C6A2	A0A484CHL8	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.989
A0A484C6A2	A0A484CLG6	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Tyrosine-protein kinase.	0.508
A0A484C6A2	A0A484CQ53	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Tyrosine-protein kinase receptor.	0.410
A0A484C6A2	A0A484D1S3	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Tyrosine-protein kinase.	0.508
A0A484C6A2	A0A484DCM4	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Tyrosine-protein kinase.	0.508
A0A484C6A2	A0A484DHP8	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.975
A0A484C889	A0A484C296	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.873
A0A484C889	A0A484C6A2	Uncharacterized protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.890
A0A484C889	A0A484CG55	Uncharacterized protein.	Tyrosine-protein kinase.	0.946