A0A484C8C8 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484C8C8

RRM domain-containing protein. (281 aa)

Predicted Functional Partners:

A0A484C2E8

0.988

A0A484DM77

0.984

A0A484CRK0

0.978

A0A484BZ88

0.973

A0A484D7W3

0.972

A0A484CXD6

0.959

A0A484CPJ1

0.950

A0A484D042

0.950

A0A484C3R4

0.943

A0A484CUZ3

0.921

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BZ88	A0A484C3R4	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A484BZ88	A0A484C8C8	Uncharacterized protein.	RRM domain-containing protein.	0.973
A0A484BZ88	A0A484CPJ1	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A484BZ88	A0A484CUZ3	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.989
A0A484BZ88	A0A484D042	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A484BZ88	A0A484D7W3	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.996
A0A484BZ88	A0A484DM77	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.944
A0A484C2E8	A0A484C3R4	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	Uncharacterized protein.	0.997
A0A484C2E8	A0A484C8C8	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	RRM domain-containing protein.	0.988
A0A484C2E8	A0A484CRK0	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	SAP domain-containing protein.	0.999
A0A484C2E8	A0A484CUZ3	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	Smg4_UPF3 domain-containing protein.	0.718
A0A484C2E8	A0A484CXD6	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	RRM domain-containing protein.	0.431
A0A484C2E8	A0A484D7W3	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.951
A0A484C2E8	A0A484DM77	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.935
A0A484C3R4	A0A484BZ88	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A484C3R4	A0A484C2E8	Uncharacterized protein.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.997
A0A484C3R4	A0A484C8C8	Uncharacterized protein.	RRM domain-containing protein.	0.943
A0A484C3R4	A0A484CRK0	Uncharacterized protein.	SAP domain-containing protein.	0.976
A0A484C3R4	A0A484CUZ3	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.798
A0A484C3R4	A0A484D7W3	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.849