STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484C9F6Uncharacterized protein. (740 aa)    
Predicted Functional Partners:
A0A484C589
Uncharacterized protein.
   
 0.986
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.984
A0A484C630
Uncharacterized protein.
    
 0.968
A0A484CA81
Uncharacterized protein.
   
 
 0.950
A0A484CSA5
Uncharacterized protein.
    
 0.936
A0A484C9L5
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 
 0.819
A0A484C327
PCI domain-containing protein.
   
   0.814
A0A484C2V0
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 
 0.807
A0A484C3T6
Archease domain-containing protein.
     
 0.800
A0A484DCS5
Uncharacterized protein.
  
 0.800
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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