A0A484CA40 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CA40

Uncharacterized protein. (182 aa)

Predicted Functional Partners:

A0A484D7G1

0.913

A0A484DGR8

0.855

A0A484CJQ7

0.820

A0A484DHK9

0.820

A0A484C463

0.819

A0A484DC19

0.819

A0A484CXC4

0.774

A0A484DAV4

0.774

A0A484CQ84

0.761

A0A484CGB0

0.753

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C463	A0A484CA40	Proteasome subunit alpha type.	Uncharacterized protein.	0.819
A0A484C463	A0A484CGB0	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.998
A0A484C463	A0A484CJQ7	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
A0A484C463	A0A484CQ84	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
A0A484C463	A0A484CXC4	Proteasome subunit alpha type.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.441
A0A484C463	A0A484D7G1	Proteasome subunit alpha type.	Uncharacterized protein.	0.557
A0A484C463	A0A484DAV4	Proteasome subunit alpha type.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.441
A0A484C463	A0A484DC19	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
A0A484C463	A0A484DGR8	Proteasome subunit alpha type.	Importin N-terminal domain-containing protein.	0.762
A0A484C463	A0A484DHK9	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
A0A484CA40	A0A484C463	Uncharacterized protein.	Proteasome subunit alpha type.	0.819
A0A484CA40	A0A484CGB0	Uncharacterized protein.	Proteasome subunit alpha type.	0.753
A0A484CA40	A0A484CJQ7	Uncharacterized protein.	Proteasome subunit beta.	0.820
A0A484CA40	A0A484CQ84	Uncharacterized protein.	Proteasome subunit alpha type.	0.761
A0A484CA40	A0A484CXC4	Uncharacterized protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.774
A0A484CA40	A0A484D7G1	Uncharacterized protein.	Uncharacterized protein.	0.913
A0A484CA40	A0A484DAV4	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.774
A0A484CA40	A0A484DC19	Uncharacterized protein.	Proteasome subunit alpha type.	0.819
A0A484CA40	A0A484DGR8	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.855
A0A484CA40	A0A484DHK9	Uncharacterized protein.	Proteasome subunit alpha type.	0.820