A0A484CAF4 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CAF4

Uncharacterized protein. (978 aa)

Predicted Functional Partners:

A0A484D599

0.456

A0A484D5F4

0.456

A0A484DEL5

0.456

A0A484DFF9

0.456

A0A484CK22

0.441

A0A484CUY5

0.424

A0A484CRI3

0.423

A0A484C956

0.422

A0A484C299

0.421

A0A484DHF3

0.420

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C299	A0A484CAF4	Uncharacterized protein.	Uncharacterized protein.	0.421
A0A484C956	A0A484CAF4	Lebercilin domain-containing protein.	Uncharacterized protein.	0.422
A0A484C956	A0A484CUY5	Lebercilin domain-containing protein.	DAGKc domain-containing protein.	0.429
A0A484CAF4	A0A484C299	Uncharacterized protein.	Uncharacterized protein.	0.421
A0A484CAF4	A0A484C956	Uncharacterized protein.	Lebercilin domain-containing protein.	0.422
A0A484CAF4	A0A484CK22	Uncharacterized protein.	FAM83 domain-containing protein.	0.441
A0A484CAF4	A0A484CRI3	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A484CAF4	A0A484CUY5	Uncharacterized protein.	DAGKc domain-containing protein.	0.424
A0A484CAF4	A0A484D599	Uncharacterized protein.	Rhodopsin.	0.456
A0A484CAF4	A0A484D5F4	Uncharacterized protein.	Rhodopsin.	0.456
A0A484CAF4	A0A484DEL5	Uncharacterized protein.	Rhodopsin.	0.456
A0A484CAF4	A0A484DFF9	Uncharacterized protein.	Rhodopsin.	0.456
A0A484CAF4	A0A484DHF3	Uncharacterized protein.	C2H2-type domain-containing protein.	0.420
A0A484CK22	A0A484CAF4	FAM83 domain-containing protein.	Uncharacterized protein.	0.441
A0A484CK22	A0A484CRI3	FAM83 domain-containing protein.	Uncharacterized protein.	0.502
A0A484CK22	A0A484DHF3	FAM83 domain-containing protein.	C2H2-type domain-containing protein.	0.456
A0A484CRI3	A0A484CAF4	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A484CRI3	A0A484CK22	Uncharacterized protein.	FAM83 domain-containing protein.	0.502
A0A484CUY5	A0A484C956	DAGKc domain-containing protein.	Lebercilin domain-containing protein.	0.429
A0A484CUY5	A0A484CAF4	DAGKc domain-containing protein.	Uncharacterized protein.	0.424