Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484CAY1Exonuclease domain-containing protein. (444 aa)    
Predicted Functional Partners:
A0A484CPH3
Brix domain-containing protein.
   
   0.957
A0A484DIY3
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
   0.952
A0A484CG77
CBF domain-containing protein.
   
 
 0.933
A0A484C4A0
Uncharacterized protein.
  
 0.928
A0A484D586
WD_REPEATS_REGION domain-containing protein.
   
   0.925
A0A484C5F5
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.921
A0A484CV53
Ribosomal_L2_C domain-containing protein.
   
  0.911
A0A484CE66
RNA helicase.
  
 0.890
A0A484D710
Uncharacterized protein.
   
 
 0.889
A0A484CCC1
LisH domain-containing protein.
   
   0.888
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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