A0A484CB22 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CB22

Uncharacterized protein. (1214 aa)

Predicted Functional Partners:

A0A484DGD0

0.832

A0A484DIL1

0.832

A0A484DKX6

0.731

A0A484D6P9

0.699

A0A484DB55

0.658

A0A484DPW7

0.656

A0A484D9I4

0.648

A0A484CSF7

0.631

A0A484C1W0

0.627

A0A484CGG2

0.627

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C1W0	A0A484CB22	Mic1 domain-containing protein.	Uncharacterized protein.	0.627
A0A484C1W0	A0A484DGD0	Mic1 domain-containing protein.	Uncharacterized protein.	0.785
A0A484C1W0	A0A484DIL1	Mic1 domain-containing protein.	Uncharacterized protein.	0.785
A0A484CB22	A0A484C1W0	Uncharacterized protein.	Mic1 domain-containing protein.	0.627
A0A484CB22	A0A484CGG2	Uncharacterized protein.	MENTAL domain-containing protein.	0.627
A0A484CB22	A0A484CSF7	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.631
A0A484CB22	A0A484D6P9	Uncharacterized protein.	Uncharacterized protein.	0.699
A0A484CB22	A0A484D9I4	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A484CB22	A0A484DB55	Uncharacterized protein.	LEM domain-containing protein.	0.658
A0A484CB22	A0A484DGD0	Uncharacterized protein.	Uncharacterized protein.	0.832
A0A484CB22	A0A484DIL1	Uncharacterized protein.	Uncharacterized protein.	0.832
A0A484CB22	A0A484DKX6	Uncharacterized protein.	Uncharacterized protein.	0.731
A0A484CB22	A0A484DPW7	Uncharacterized protein.	Uncharacterized protein.	0.656
A0A484CGG2	A0A484CB22	MENTAL domain-containing protein.	Uncharacterized protein.	0.627
A0A484CGG2	A0A484DKX6	MENTAL domain-containing protein.	Uncharacterized protein.	0.676
A0A484CSF7	A0A484CB22	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.631
A0A484D6P9	A0A484CB22	Uncharacterized protein.	Uncharacterized protein.	0.699
A0A484D9I4	A0A484CB22	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A484D9I4	A0A484DB55	Uncharacterized protein.	LEM domain-containing protein.	0.657
A0A484DB55	A0A484CB22	LEM domain-containing protein.	Uncharacterized protein.	0.658