A0A484CB32 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CB32

CRIB domain-containing protein. (397 aa)

Predicted Functional Partners:

A0A484D6M3

0.758

A0A484DG52

0.758

A0A484CJK6

0.657

A0A484D8I1

0.657

A0A484CIF9

0.596

A0A484CTE6

0.596

A0A484CXS2

0.596

A0A484DNX4

0.596

A0A484C8X8

0.564

A0A484CBG7

0.564

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C8X8	A0A484CB32	Uncharacterized protein.	CRIB domain-containing protein.	0.564
A0A484C8X8	A0A484CIF9	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A484C8X8	A0A484CJK6	Uncharacterized protein.	Uncharacterized protein.	0.663
A0A484C8X8	A0A484CTE6	Uncharacterized protein.	Uncharacterized protein.	0.665
A0A484C8X8	A0A484CXS2	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A484C8X8	A0A484D6M3	Uncharacterized protein.	Uncharacterized protein.	0.730
A0A484C8X8	A0A484D8I1	Uncharacterized protein.	Uncharacterized protein.	0.663
A0A484C8X8	A0A484DG52	Uncharacterized protein.	Uncharacterized protein.	0.729
A0A484C8X8	A0A484DNX4	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A484CB32	A0A484C8X8	CRIB domain-containing protein.	Uncharacterized protein.	0.564
A0A484CB32	A0A484CBG7	CRIB domain-containing protein.	Uncharacterized protein.	0.564
A0A484CB32	A0A484CIF9	CRIB domain-containing protein.	Uncharacterized protein.	0.596
A0A484CB32	A0A484CJK6	CRIB domain-containing protein.	Uncharacterized protein.	0.657
A0A484CB32	A0A484CTE6	CRIB domain-containing protein.	Uncharacterized protein.	0.596
A0A484CB32	A0A484CXS2	CRIB domain-containing protein.	Uncharacterized protein.	0.596
A0A484CB32	A0A484D6M3	CRIB domain-containing protein.	Uncharacterized protein.	0.758
A0A484CB32	A0A484D8I1	CRIB domain-containing protein.	Uncharacterized protein.	0.657
A0A484CB32	A0A484DG52	CRIB domain-containing protein.	Uncharacterized protein.	0.758
A0A484CB32	A0A484DNX4	CRIB domain-containing protein.	Uncharacterized protein.	0.596
A0A484CBG7	A0A484CB32	Uncharacterized protein.	CRIB domain-containing protein.	0.564