A0A484CB59 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CB59

VWFA domain-containing protein. (610 aa)

Predicted Functional Partners:

A0A484CVN9

0.999

A0A484C505

0.998

A0A484C3N5

0.996

A0A484CNR2

0.994

A0A484CMS3

0.993

A0A484BZ38

0.992

A0A484C8Y6

0.990

A0A484CHT2

0.986

A0A484CPC9

0.985

A0A484DI70

0.985

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BZ38	A0A484C3N5	Uncharacterized protein.	DNA ligase.	0.993
A0A484BZ38	A0A484C505	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.995
A0A484BZ38	A0A484CB59	Uncharacterized protein.	VWFA domain-containing protein.	0.992
A0A484BZ38	A0A484CMS3	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A484BZ38	A0A484CNR2	Uncharacterized protein.	DNA ligase.	0.661
A0A484BZ38	A0A484CPC9	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.400
A0A484BZ38	A0A484CVN9	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.990
A0A484BZ38	A0A484DI70	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.890
A0A484C3N5	A0A484BZ38	DNA ligase.	Uncharacterized protein.	0.993
A0A484C3N5	A0A484C505	DNA ligase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.993
A0A484C3N5	A0A484C8Y6	DNA ligase.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.927
A0A484C3N5	A0A484CB59	DNA ligase.	VWFA domain-containing protein.	0.996
A0A484C3N5	A0A484CMS3	DNA ligase.	Uncharacterized protein.	0.999
A0A484C3N5	A0A484CPC9	DNA ligase.	Poly [ADP-ribose] polymerase.	0.911
A0A484C3N5	A0A484CVN9	DNA ligase.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.998
A0A484C3N5	A0A484DI70	DNA ligase.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.873
A0A484C505	A0A484BZ38	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.995
A0A484C505	A0A484C3N5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA ligase.	0.993
A0A484C505	A0A484C8Y6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.981
A0A484C505	A0A484CB59	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	VWFA domain-containing protein.	0.998