A0A484CB82 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CB82

PH domain-containing protein. (2385 aa)

Predicted Functional Partners:

A0A484CKX8

0.940

A0A484C979

0.587

A0A484CFW8

0.586

A0A484CFF1

0.572

A0A484CJW1

0.572

A0A484DB95

0.572

A0A484DLA9

0.572

A0A484DPF5

0.555

A0A484CEW5

0.553

A0A484CGX8

0.553

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C979	A0A484CB82	Uncharacterized protein; Belongs to the actin family.	PH domain-containing protein.	0.587
A0A484C979	A0A484CFF1	Uncharacterized protein; Belongs to the actin family.	Aldolase_II domain-containing protein.	0.438
A0A484C979	A0A484CFW8	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.998
A0A484C979	A0A484CJW1	Uncharacterized protein; Belongs to the actin family.	Aldolase_II domain-containing protein.	0.438
A0A484C979	A0A484CKX8	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.418
A0A484C979	A0A484DB95	Uncharacterized protein; Belongs to the actin family.	Aldolase_II domain-containing protein.	0.438
A0A484C979	A0A484DLA9	Uncharacterized protein; Belongs to the actin family.	Aldolase_II domain-containing protein.	0.438
A0A484C979	A0A484DPF5	Uncharacterized protein; Belongs to the actin family.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.567
A0A484CB82	A0A484C979	PH domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.587
A0A484CB82	A0A484CEW5	PH domain-containing protein.	HP domain-containing protein.	0.553
A0A484CB82	A0A484CFF1	PH domain-containing protein.	Aldolase_II domain-containing protein.	0.572
A0A484CB82	A0A484CFW8	PH domain-containing protein.	Uncharacterized protein.	0.586
A0A484CB82	A0A484CGX8	PH domain-containing protein.	Uncharacterized protein.	0.553
A0A484CB82	A0A484CJW1	PH domain-containing protein.	Aldolase_II domain-containing protein.	0.572
A0A484CB82	A0A484CKX8	PH domain-containing protein.	Uncharacterized protein.	0.940
A0A484CB82	A0A484DB95	PH domain-containing protein.	Aldolase_II domain-containing protein.	0.572
A0A484CB82	A0A484DLA9	PH domain-containing protein.	Aldolase_II domain-containing protein.	0.572
A0A484CB82	A0A484DPF5	PH domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.555
A0A484CEW5	A0A484CB82	HP domain-containing protein.	PH domain-containing protein.	0.553
A0A484CEW5	A0A484CFF1	HP domain-containing protein.	Aldolase_II domain-containing protein.	0.787