A0A484CB93 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CB93

Uncharacterized protein. (367 aa)

Predicted Functional Partners:

A0A484DPX6

0.977

A0A484CPH8

0.942

A0A484CF19

0.941

A0A484DKT1

0.936

A0A484C3G0

0.914

A0A484D4R3

0.914

A0A484DPK4

0.914

A0A484CM24

0.906

A0A484D8Q0

0.893

A0A484CT73

0.881

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C3G0	A0A484CB93	Uncharacterized protein.	Uncharacterized protein.	0.914
A0A484C3G0	A0A484CF19	Uncharacterized protein.	Uncharacterized protein.	0.923
A0A484C3G0	A0A484CM24	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.980
A0A484C3G0	A0A484CPH8	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.984
A0A484C3G0	A0A484CT73	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A484C3G0	A0A484D4R3	Uncharacterized protein.	TAFII28 domain-containing protein.	0.974
A0A484C3G0	A0A484D8Q0	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.980
A0A484C3G0	A0A484DKT1	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.937
A0A484C3G0	A0A484DPK4	Uncharacterized protein.	Uncharacterized protein.	0.902
A0A484C3G0	A0A484DPX6	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.972
A0A484CB93	A0A484C3G0	Uncharacterized protein.	Uncharacterized protein.	0.914
A0A484CB93	A0A484CF19	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A484CB93	A0A484CM24	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.906
A0A484CB93	A0A484CPH8	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.942
A0A484CB93	A0A484CT73	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A484CB93	A0A484D4R3	Uncharacterized protein.	TAFII28 domain-containing protein.	0.914
A0A484CB93	A0A484D8Q0	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.893
A0A484CB93	A0A484DKT1	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.936
A0A484CB93	A0A484DPK4	Uncharacterized protein.	Uncharacterized protein.	0.914
A0A484CB93	A0A484DPX6	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.977