A0A484CBD9 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CBD9

TACC_C domain-containing protein. (3379 aa)

Predicted Functional Partners:

A0A484D239

0.919

A0A484CY07

0.874

A0A484CWS6

0.809

A0A484DF02

0.809

A0A484CQ65

0.721

A0A484DBJ2

0.721

A0A484DKG0

0.721

A0A484DG86

0.717

A0A484CDN6

0.716

A0A484CLL6

0.706

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484CBD9	A0A484CDN6	TACC_C domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.716
A0A484CBD9	A0A484CLL6	TACC_C domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.706
A0A484CBD9	A0A484CQ65	TACC_C domain-containing protein.	Serine/threonine-protein kinase PLK.	0.721
A0A484CBD9	A0A484CWS6	TACC_C domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.809
A0A484CBD9	A0A484CY07	TACC_C domain-containing protein.	Uncharacterized protein.	0.874
A0A484CBD9	A0A484D239	TACC_C domain-containing protein.	Uncharacterized protein.	0.919
A0A484CBD9	A0A484DBJ2	TACC_C domain-containing protein.	Serine/threonine-protein kinase PLK.	0.721
A0A484CBD9	A0A484DF02	TACC_C domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.809
A0A484CBD9	A0A484DG86	TACC_C domain-containing protein.	Peptidase C50 domain-containing protein.	0.717
A0A484CBD9	A0A484DKG0	TACC_C domain-containing protein.	Serine/threonine-protein kinase PLK.	0.721
A0A484CDN6	A0A484CBD9	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	TACC_C domain-containing protein.	0.716
A0A484CDN6	A0A484CY07	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.985
A0A484CLL6	A0A484CBD9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	TACC_C domain-containing protein.	0.706
A0A484CQ65	A0A484CBD9	Serine/threonine-protein kinase PLK.	TACC_C domain-containing protein.	0.721
A0A484CQ65	A0A484CWS6	Serine/threonine-protein kinase PLK.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.932
A0A484CQ65	A0A484D239	Serine/threonine-protein kinase PLK.	Uncharacterized protein.	0.832
A0A484CQ65	A0A484DF02	Serine/threonine-protein kinase PLK.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.933
A0A484CQ65	A0A484DG86	Serine/threonine-protein kinase PLK.	Peptidase C50 domain-containing protein.	0.975
A0A484CWS6	A0A484CBD9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	TACC_C domain-containing protein.	0.809
A0A484CWS6	A0A484CQ65	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase PLK.	0.932