A0A484CBN1 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CBN1

UmuC domain-containing protein. (739 aa)

Predicted Functional Partners:

A0A484DC07

0.998

A0A484DAN9

0.993

A0A484CUW4

0.992

A0A484C7Z8

0.978

A0A484D6F7

0.974

A0A484CME9

0.954

A0A484CH80

0.949

A0A484DHL5

0.936

A0A484CCQ2

0.928

A0A484DBR3

0.927

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C7Z8	A0A484CBN1	Uncharacterized protein.	UmuC domain-containing protein.	0.978
A0A484C7Z8	A0A484CH80	Uncharacterized protein.	DNA polymerase.	0.904
A0A484C7Z8	A0A484CUW4	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A484C7Z8	A0A484D6F7	Uncharacterized protein.	HORMA domain-containing protein.	0.999
A0A484C7Z8	A0A484DBR3	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.896
A0A484C7Z8	A0A484DC07	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.991
A0A484C7Z8	A0A484DHL5	Uncharacterized protein.	Uncharacterized protein.	0.942
A0A484CBN1	A0A484C7Z8	UmuC domain-containing protein.	Uncharacterized protein.	0.978
A0A484CBN1	A0A484CCQ2	UmuC domain-containing protein.	Ubiquitin-like domain-containing protein.	0.928
A0A484CBN1	A0A484CH80	UmuC domain-containing protein.	DNA polymerase.	0.949
A0A484CBN1	A0A484CME9	UmuC domain-containing protein.	Uncharacterized protein.	0.954
A0A484CBN1	A0A484CUW4	UmuC domain-containing protein.	Uncharacterized protein.	0.992
A0A484CBN1	A0A484D6F7	UmuC domain-containing protein.	HORMA domain-containing protein.	0.974
A0A484CBN1	A0A484DAN9	UmuC domain-containing protein.	Uncharacterized protein.	0.993
A0A484CBN1	A0A484DBR3	UmuC domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.927
A0A484CBN1	A0A484DC07	UmuC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.998
A0A484CBN1	A0A484DHL5	UmuC domain-containing protein.	Uncharacterized protein.	0.936
A0A484CCQ2	A0A484CBN1	Ubiquitin-like domain-containing protein.	UmuC domain-containing protein.	0.928
A0A484CCQ2	A0A484CME9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.998
A0A484CCQ2	A0A484CUW4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.950