A0A484CBU4 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CBU4

PKS_ER domain-containing protein. (354 aa)

Predicted Functional Partners:

A0A484CEV5

0.791

A0A484D7H2

0.743

A0A484C8G1

0.717

A0A484CCM0

0.705

A0A484CZB0

0.685

A0A484C114

0.680

A0A484C342

0.680

A0A484C755

0.680

A0A484BZX6

0.652

A0A484D5K3

0.644

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BZX6	A0A484CBU4	Uncharacterized protein.	PKS_ER domain-containing protein.	0.652
A0A484BZX6	A0A484CEV5	Uncharacterized protein.	SCP2 domain-containing protein.	0.405
A0A484BZX6	A0A484D5K3	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A484BZX6	A0A484D7H2	Uncharacterized protein.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.785
A0A484C114	A0A484CBU4	Carrier domain-containing protein.	PKS_ER domain-containing protein.	0.680
A0A484C114	A0A484CEV5	Carrier domain-containing protein.	SCP2 domain-containing protein.	0.548
A0A484C342	A0A484CBU4	Carrier domain-containing protein.	PKS_ER domain-containing protein.	0.680
A0A484C342	A0A484CEV5	Carrier domain-containing protein.	SCP2 domain-containing protein.	0.548
A0A484C755	A0A484CBU4	Carrier domain-containing protein.	PKS_ER domain-containing protein.	0.680
A0A484C755	A0A484CEV5	Carrier domain-containing protein.	SCP2 domain-containing protein.	0.548
A0A484C8G1	A0A484CBU4	B12-binding domain-containing protein.	PKS_ER domain-containing protein.	0.717
A0A484C8G1	A0A484CCM0	B12-binding domain-containing protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.560
A0A484CBU4	A0A484BZX6	PKS_ER domain-containing protein.	Uncharacterized protein.	0.652
A0A484CBU4	A0A484C114	PKS_ER domain-containing protein.	Carrier domain-containing protein.	0.680
A0A484CBU4	A0A484C342	PKS_ER domain-containing protein.	Carrier domain-containing protein.	0.680
A0A484CBU4	A0A484C755	PKS_ER domain-containing protein.	Carrier domain-containing protein.	0.680
A0A484CBU4	A0A484C8G1	PKS_ER domain-containing protein.	B12-binding domain-containing protein.	0.717
A0A484CBU4	A0A484CCM0	PKS_ER domain-containing protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.705
A0A484CBU4	A0A484CEV5	PKS_ER domain-containing protein.	SCP2 domain-containing protein.	0.791
A0A484CBU4	A0A484CZB0	PKS_ER domain-containing protein.	ATP-synt_DE_N domain-containing protein.	0.685