A0A484CBY9 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CBY9

TPR_REGION domain-containing protein. (857 aa)

Predicted Functional Partners:

A0A484CYW4

0.999

A0A484CM97

0.998

A0A484CZ11

0.998

A0A484DR62

0.998

A0A484CKG8

0.997

A0A484CV78

0.997

A0A484DJA2

0.997

A0A484CUX8

0.993

A0A484CSL8

0.989

A0A484D3Z8

0.931

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484CBY9	A0A484CKG8	TPR_REGION domain-containing protein.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.997
A0A484CBY9	A0A484CM97	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A484CBY9	A0A484CSL8	TPR_REGION domain-containing protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.989
A0A484CBY9	A0A484CUX8	TPR_REGION domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.993
A0A484CBY9	A0A484CV78	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.997
A0A484CBY9	A0A484CYW4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A484CBY9	A0A484CZ11	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A484CBY9	A0A484D3Z8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.931
A0A484CBY9	A0A484DJA2	TPR_REGION domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.997
A0A484CBY9	A0A484DR62	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A484CKG8	A0A484CBY9	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	TPR_REGION domain-containing protein.	0.997
A0A484CKG8	A0A484CM97	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Uncharacterized protein.	0.996
A0A484CKG8	A0A484CSL8	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
A0A484CKG8	A0A484CUX8	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Cyclic nucleotide-binding domain-containing protein.	0.999
A0A484CKG8	A0A484CV78	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Uncharacterized protein.	0.999
A0A484CKG8	A0A484CYW4	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Uncharacterized protein.	0.999
A0A484CKG8	A0A484CZ11	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Uncharacterized protein.	0.999
A0A484CKG8	A0A484D3Z8	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Uncharacterized protein.	0.979
A0A484CKG8	A0A484DJA2	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
A0A484CKG8	A0A484DR62	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	Uncharacterized protein.	0.999