A0A484CC09 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CC09

Uncharacterized protein. (383 aa)

Predicted Functional Partners:

A0A484CIM4

0.999

A0A484D0H6

0.999

A0A484CHR7

0.996

A0A484CP80

0.985

A0A484CNY0

0.978

A0A484C2X2

0.945

A0A484CVU7

0.892

A0A484DKS1

0.759

RNF8

0.754

A0A484CQX7

0.739

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A484C2X2	A0A484CC09	A0A484C2X2	A0A484CC09	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A484C2X2	A0A484CHR7	A0A484C2X2	A0A484CHR7	Uncharacterized protein.	MPN domain-containing protein.	0.911
A0A484C2X2	A0A484CIM4	A0A484C2X2	A0A484CIM4	Uncharacterized protein.	MPN domain-containing protein.	0.970
A0A484C2X2	A0A484CNY0	A0A484C2X2	A0A484CNY0	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A484C2X2	A0A484CP80	A0A484C2X2	A0A484CP80	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A484C2X2	A0A484CQX7	A0A484C2X2	A0A484CQX7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.970
A0A484C2X2	A0A484CVU7	A0A484C2X2	A0A484CVU7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A484C2X2	A0A484D0H6	A0A484C2X2	A0A484D0H6	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A484C2X2	A0A484DKS1	A0A484C2X2	A0A484DKS1	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.987
A0A484C2X2	RNF8	A0A484C2X2	A0A484CA27	Uncharacterized protein.	E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...]	0.833
A0A484CC09	A0A484C2X2	A0A484CC09	A0A484C2X2	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A484CC09	A0A484CHR7	A0A484CC09	A0A484CHR7	Uncharacterized protein.	MPN domain-containing protein.	0.996
A0A484CC09	A0A484CIM4	A0A484CC09	A0A484CIM4	Uncharacterized protein.	MPN domain-containing protein.	0.999
A0A484CC09	A0A484CNY0	A0A484CC09	A0A484CNY0	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A484CC09	A0A484CP80	A0A484CC09	A0A484CP80	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A484CC09	A0A484CQX7	A0A484CC09	A0A484CQX7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.739
A0A484CC09	A0A484CVU7	A0A484CC09	A0A484CVU7	Uncharacterized protein.	Uncharacterized protein.	0.892
A0A484CC09	A0A484D0H6	A0A484CC09	A0A484D0H6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A484CC09	A0A484DKS1	A0A484CC09	A0A484DKS1	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.759
A0A484CC09	RNF8	A0A484CC09	A0A484CA27	Uncharacterized protein.	E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...]	0.754