A0A484CC42 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CC42

DNA_binding_1 domain-containing protein. (240 aa)

Predicted Functional Partners:

A0A484D742

0.902

A0A484DHQ5

0.735

A0A484DI70

0.659

A0A484CCD8

0.658

A0A484CM11

0.653

A0A484C333

0.638

A0A484CZJ0

0.637

A0A484CB49

0.633

A0A484CAP4

0.623

A0A484C8B0

0.619

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C333	A0A484C8B0	RF_PROK_I domain-containing protein.	PseudoU_synth_1 domain-containing protein.	0.685
A0A484C333	A0A484CB49	RF_PROK_I domain-containing protein.	DNA_mis_repair domain-containing protein.	0.472
A0A484C333	A0A484CC42	RF_PROK_I domain-containing protein.	DNA_binding_1 domain-containing protein.	0.638
A0A484C8B0	A0A484C333	PseudoU_synth_1 domain-containing protein.	RF_PROK_I domain-containing protein.	0.685
A0A484C8B0	A0A484CC42	PseudoU_synth_1 domain-containing protein.	DNA_binding_1 domain-containing protein.	0.619
A0A484C8B0	A0A484CZJ0	PseudoU_synth_1 domain-containing protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.465
A0A484CAP4	A0A484CB49	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.996
A0A484CAP4	A0A484CC42	Uncharacterized protein.	DNA_binding_1 domain-containing protein.	0.623
A0A484CAP4	A0A484CCD8	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.993
A0A484CAP4	A0A484D742	Uncharacterized protein.	ENDO3c domain-containing protein.	0.645
A0A484CAP4	A0A484DI70	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.991
A0A484CB49	A0A484C333	DNA_mis_repair domain-containing protein.	RF_PROK_I domain-containing protein.	0.472
A0A484CB49	A0A484CAP4	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.996
A0A484CB49	A0A484CC42	DNA_mis_repair domain-containing protein.	DNA_binding_1 domain-containing protein.	0.633
A0A484CB49	A0A484CCD8	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.997
A0A484CB49	A0A484CM11	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.431
A0A484CB49	A0A484CZJ0	DNA_mis_repair domain-containing protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.587
A0A484CB49	A0A484D742	DNA_mis_repair domain-containing protein.	ENDO3c domain-containing protein.	0.557
A0A484CB49	A0A484DI70	DNA_mis_repair domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.609
A0A484CC42	A0A484C333	DNA_binding_1 domain-containing protein.	RF_PROK_I domain-containing protein.	0.638