A0A484CC42 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CC42

DNA_binding_1 domain-containing protein. (240 aa)

Predicted Functional Partners:

A0A484DHQ5

0.921

A0A484CSE1

0.883

A0A484DC07

0.828

A0A484D7F4

0.771

A0A484CCM0

0.727

A0A484CCD8

0.708

A0A484CB49

0.702

A0A484C3D0

0.689

A0A484DMJ5

0.689

A0A484D394

0.671

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C3D0	A0A484CB49	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.999
A0A484C3D0	A0A484CC42	Uncharacterized protein.	DNA_binding_1 domain-containing protein.	0.689
A0A484C3D0	A0A484CCD8	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.998
A0A484C3D0	A0A484CCM0	Uncharacterized protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.883
A0A484C3D0	A0A484D7F4	Uncharacterized protein.	Alkyl transferase; Belongs to the UPP synthase family.	0.403
A0A484C3D0	A0A484DC07	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.981
A0A484C3D0	A0A484DMJ5	Uncharacterized protein.	XPA_C domain-containing protein.	0.651
A0A484CB49	A0A484C3D0	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.999
A0A484CB49	A0A484CC42	DNA_mis_repair domain-containing protein.	DNA_binding_1 domain-containing protein.	0.702
A0A484CB49	A0A484CCD8	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.999
A0A484CB49	A0A484CCM0	DNA_mis_repair domain-containing protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.916
A0A484CB49	A0A484DC07	DNA_mis_repair domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.993
A0A484CB49	A0A484DMJ5	DNA_mis_repair domain-containing protein.	XPA_C domain-containing protein.	0.525
A0A484CC42	A0A484C3D0	DNA_binding_1 domain-containing protein.	Uncharacterized protein.	0.689
A0A484CC42	A0A484CB49	DNA_binding_1 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.702
A0A484CC42	A0A484CCD8	DNA_binding_1 domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.708
A0A484CC42	A0A484CCM0	DNA_binding_1 domain-containing protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.727
A0A484CC42	A0A484CSE1	DNA_binding_1 domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.883
A0A484CC42	A0A484D394	DNA_binding_1 domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.671
A0A484CC42	A0A484D7F4	DNA_binding_1 domain-containing protein.	Alkyl transferase; Belongs to the UPP synthase family.	0.771